Program, Pipeline Name or Method Name

Hisat, Samtools, Bedtools

Program, Pipeline or Method version

2.2.0, 1.10, 2.27.1

Source Name

Rick Masonbrink

Time Executed

Dec. 12, 2022, 1:52 p.m.

Category

Gene expression

Description

RNAseq from three reps of MM10 (Hg-type 1-7) J2 gland cells aligned with Hisat2 --very-sensitive and according to strand information. Converted to bam and merged with Samtools, then converted to bigwig using Bedtools genomcov and kentUtils.

File

MergedRNAMM10J2A_sorted.bw