Program, Pipeline Name or Method Name

Inverted Repeat Finder,Repeatmodeler, RepeatMasker, Bedtools

Program, Pipeline or Method version

Inverted Repeat Finder (3.07), Repeatmodeler 1.0.8, RepeatMasker 4.0.6, Bedtools 2.26.0

Source Name

Full length TIR pairs models merged with bedtools. Only those that overlap with repeatmodeler repeats, merged with bed

Time Executed

April 6, 2018, midnight

Category

Genome structure

Description

A RepeatModeler library was created from the genome, which was subsequently used for masking with RepeatMasker. TIR pairs were identified in the genome with Inverted Repeat Finder, followed by Bedtools merge to create proper overlaps for nested TIR's. Overlap between the two sets of output were identified with Bedtools intersect.

File

supportedirfmergeclassifiedscnbasesorted.bed.gz

Index

supportedirfmergeclassifiedscnbasesorted.bed.gz.tbi