Program, Pipeline Name or Method Name

Trinity transcriptome with Gmap alignment

Program, Pipeline or Method version

Trinity 2.3.2, Gmap 2016-04-04

Source Name

PA3 H. glycines transcriptome. Grown on susceptible and resistant soybean cultivars

Time Executed

April 5, 2018, midnight

Category

Transcripts

Description

Trinity transcriptome was genome guided under default parameters. gmap -D /data013/GIF/remkv6/Baum/CamTechGenomeComparison/30_transcriptMappingUpdated/ -d genome738sl.polished.mitoFixed -B 5 -t 16 --input-buffer-size=1000000 --output-buffer-size=1000000 -f 2 nematode_transcripts_full_Trinity_genome_guided.fasta

File

nematode_transcripts_trinity.fasta_sorted_sorted.gff_.gz

Index

nematode_transcripts_trinity.fasta_sorted_sorted.gff_.gz.tbi