Program, Pipeline Name or Method Name

Gmap alignment with default parameters

Program, Pipeline or Method version

Gmap 2016-04-04

Source Name

80 Known effectors Thomas Baum Lab

Time Executed

April 6, 2018, midnight

Category

Genes

Description

Gene sequences were obtained from the Thomas Baum lab and aligned to the genome using Gmap under default parameters. Effectors uses are referenced in these publications: Gao B, Allen R, Maier T, Davis EL, Baum TJ, Hussey RS (2001) Identification of putative parasitism genes expressed in the esophageal gland cells of the soybean cyst nematode Heterodera glycines. Molecular Plant-Microbe Interactions 14:1247-1254 Gao B, Allen R, Maier T, Davis EL, Baum TJ, Hussey RS (2001) Identification of putative parasitism genes expressed in the esophageal gland cells of the soybean cyst nematode Heterodera glycines. Molecular Plant-Microbe Interactions 14:1247-1254 Gao B, Allen R, Maier T, Davis EL, Baum TJ, Hussey RS (2003) The parasitome of the phytonematode Heterodera glycines. Molecular Plant-Microbe Interactions 16:720-726 Noon JB, Hewezi T, Maier TR, Simmons C, Wei J-Z, Wu G, Llaca V, Deschamps S, Davis EL, Mitchum MG (2015) Eighteen new candidate effectors of the phytonematode Heterodera glycines produced specifically in the secretory esophageal gland cells during parasitism. Phytopathology 105:1362-1372

File

test2.gz

Index

test2.gz.tbi