Program, Pipeline Name or Method Name

Braker gene prediction,opscan orthologue calling, iadhore synteny

Program, Pipeline or Method version

braker1.9, Opscan 0.1, iAdHoRe 3.0.01

Source Name

Monsanto/JGI

Time Executed

June 1, 2018, midnight

Category

Genome structure

Description

Genes were called on the JGI assembly using braker and RNA-seq data. Orthologs were called using opscan, and synteny was inferred with iadhore. Submitter: Monsanto Assembly level: Scaffold Assembly: GCA_000150805.1 HG2 scaffolds: 34,708 contigs: 45,541 N50: 2,067 L50: 11,640 BioProjects: PRJNA56061, PRJNA28939 Whole Genome Shotgun (WGS): INSDC: ABLA00000000.1 Statistics: total length (Mb): 81.908 GC%: 37.5

File

jgisynteny.bed.gz

Index

jgisynteny.bed.gz.tbi