Red Tandem used one scaffold at a time
RedTandem V0
H. glycines genomic tandem duplications
April 6, 2018, midnight
Genome structure
Ran on scaffold by scaffold basis with default parameters, so tandem repeats are only identified if they are duplicated on the same scaffold. Software found here. http://snp.toulouse.inra.fr/~faraut/ReDTandem/
redtandemalljbrowsesort.bed.gz